Neuroscience tool to make 3D reconstructions from brain slice images
Stalefish is a tool to analyse gene expression. From your brain slice images you can build 3D
expression surfaces and then convert these into 2D expression maps or save them in GL transmission format (glTF). For more details see the preprint: https://www.biorxiv.org/content/10.1101/2021.07.28.454203v1.
Significant contributions to this software were made by Mackenzie Englund (original concept and Python implementation of polynomial curve fitting) and Stuart Wilson (initial C++ implementation of polynomial fitting and box-based luminance sampling using OpenCV). Bezier curve fitting, slice alignment algorithms, 3D visualization, 3D to 2D digital unwrapping and alignment of maps to a common coordinate alignment were developed by Seb James.
Enable snaps on Linux Mint and install Stalefish: Spatial ISH Analysis
Snaps are applications packaged with all their dependencies to run on all popular Linux distributions from a single build. They update automatically and roll back gracefully.
Snaps are discoverable and installable from the Snap Store, an app store with an audience of millions.
Snap is available for Linux Mint 18.2 (Sonya), Linux Mint 18.3 (Sylvia), Linux Mint 19 (Tara), Linux Mint 19.1 (Tessa) and the latest release, Linux Mint 20 (Ulyana).
You can find out which version of Linux Mint you’re running by opening System info from the Preferences menu.
On Linux Mint 20, /etc/apt/preferences.d/nosnap.pref needs to be removed before Snap can be installed. This can be accomplished from the command line: