Drutai is a deep learning–based framework for predicting interactions between small molecule drugs and protein targets. And this is a high-performance drug-target interaction prediction tool using ONNX models, with easier installation, higher performance as well as less dependency requirements . It supports multiple deep learning architectures including LSTMCNN, CNN, ConvMixer64, DSConv, MobileNetV2, ResNet18, and SEResNet.
Usage (single-table mode, recommended):
drutai.predict -m lstmcnn
-i input.tsv
-t fasta_dir/
-o output.drutai
Usage (legacy mode, compatible with original drutai format):
drutai.predict -m lstmcnn
--br relations.txt
--smile smiles.txt
-t fasta_dir/
-o output.drutai
Arguments: -m MODEL Model name (default and recommended: lstmcnn) -i INPUT Single-table TSV input (columns: sm, target, smile) --br FILE [Legacy] Drug-protein relation file (columns: sm, target) --smile FILE [Legacy] Drug SMILES file (columns: sm, smile) -t FASTA_DIR Directory containing per-target .fasta files -o OUTPUT Output file (default: predictions_onnx.drutai) -j THREADS Number of threads for feature extraction (default: all CPUs)
Available models: lstmcnn, cnn, convmixer64, dsconv, mobilenetv2, resnet_prea18_tf2, scaresnet
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Snaps are applications packaged with all their dependencies to run on all popular Linux distributions from a single build. They update automatically and roll back gracefully.
Snaps are discoverable and installable from the Snap Store, an app store with an audience of millions.
On Arch Linux, snap can be installed from the Arch User Repository (AUR). The manual build process is the Arch-supported install method for AUR packages, and you’ll need the prerequisites installed before you can install any AUR package. You can then install snap with the following:
git clone https://aur.archlinux.org/snapd.git
cd snapd
makepkg -si
Once installed, the systemd unit that manages the main snap communication socket needs to be enabled:
sudo systemctl enable --now snapd.socket
If AppArmor is enabled in your system, enable the service which loads AppArmor profiles for snaps:
sudo systemctl enable --now snapd.apparmor.service
To enable classic snap support, enter the following to create a symbolic link between /var/lib/snapd/snap and /snap:
sudo ln -s /var/lib/snapd/snap /snap
Either log out and back in again, or restart your system, to ensure snap’s paths are updated correctly.
To install drutai, simply use the following command:
sudo snap install drutai
Browse and find snaps from the convenience of your desktop using the snap store snap.
Interested to find out more about snaps? Want to publish your own application? Visit snapcraft.io now.