GIGI2 is a computer program to impute missing genotypes on pedigrees. The
approach handles large pedigrees by using a Markov Chain Monte Carlo-based
program to infer inheritance vectors. Our approach has 2 steps: 1. use the
program gl_auto from the MORGAN package to infer inference vectors using
genotypes from informative framework markers 2. use GIGI to impute missing
Note 1: gl_auto and MORGAN are NOT included in this snap, gl_auto
should be obtained through its own channels. GIGI2 inputs are outputs from gl_auto.
Note 2: The strict confinement of this app limits where it can write to. To allow it to write in your home directory, you need to attach the home interface to the snap. Likewise if you need to write to external devices mounted in /mnt or /media.
e.g. 'snap connect gigi2:home :home' to be able to write in your /home/user
and 'snap connect gigi2:removable-media :removable-media' to write in
/mnt/vol_name and /media/vol_name
If you need to write to other locations, then you will need to install the
snap in devmode, e.g. 'snap install --devmode gigi2' If it was already
installed and you need to install in devmode, then I recommend first
removing the currently installed version, 'snap remove gigi2'
Swap out openSUSE_Leap_15.2 for openSUSE_Leap_15.1, openSUSE_Leap_15.0, or openSUSE_Tumbleweed if you’re using a different version of openSUSE.
With the repository added, import its GPG key:
sudo zypper --gpg-auto-import-keys refresh
Finally, upgrade the package cache to include the new snappy repository:
sudo zypper dup --from snappy
Snap can now be installed with the following:
sudo zypper install snapd
You then need to either reboot, logout/login or source /etc/profile to have /snap/bin added to PATH.
Additionally, enable and start both the snapd and the snapd.apparmor services with the following commands: