"GLIMPSE2 is a set of tools for low-coverage whole genome sequencing imputation. GLIMPSE2 is based on the GLIMPSE model and designed for reference panels containing hundreads of thousands of reference samples, with a special focus on rare variants."
I have packaged the software as a snap for personal use but I have made the snap available for free.
I do not maintain the software itself. I only maintain the snap packaging. Please report software bugs to the maintainers.
Report snap-specific bugs to me.
I DO use this snap. It HAS PASSED ALL THE PROVIDED TESTS on my system. I do not track the latest version.
Packaging 'style' : binary for linux machines.
License refers to the original software, not the snapcraft 'code'.
Run the following to rename the snap commands to GLIMPSE2_<command>
```sudo snap alias rjd-glimpse.chunk GLIMPSE2_chunk```
```sudo snap alias rjd-glimpse.concordance GLIMPSE2_concordance```
```sudo snap alias rjd-glimpse.ligate GLIMPSE2_ligate```
```sudo snap alias rjd-glimpse.phase GLIMPSE2_phase```
```sudo snap alias rjd-glimpse.split-reference GLIMPSE2_split_reference```
Snaps are applications packaged with all their dependencies to run on all popular Linux distributions from a single build. They update automatically and roll back gracefully.
Snaps are discoverable and installable from the Snap Store, an app store with an audience of millions.
For versions of Ubuntu between 14.04 LTS (Trusty Tahr) and 15.10 (Wily Werewolf), as well as Ubuntu flavours that don’t include snap by default, snap can be installed from the Ubuntu Software Centre by searching for snapd.
Alternatively, snapd can be installed from the command line:
sudo apt update
sudo apt install snapd
Either log out and back in again, or restart your system, to ensure snap’s paths are updated correctly.
Install glimpse
To install glimpse, simply use the following command: